The graphical representation of a hydrogeological model includes the initial data maps and simulation result maps for individual layers included in the model and also in the form of profile maps. The latter contains a collection of data not only from individual layers of a hydrogeological model, but also represents interlayer interactions and the reasons for it. Unfortunately, neither modeling environments nor geological information processing systems offer high-quality profiles along a freely chosen line. At the same time, vertical profiles are a valuable decision-making tool in the case of commercial local hydrogeological models, by which simulates contamination movements, calculates sanitary zones, excavations, and other tasks related to the groundwater flow. Vertical profiles in the case of regional models allow better assessment of groundwater flow processes in a wider area and they can be used as an excellent diagnostic tool for the maintenance and development of hydrogeological models. Attempts to obtain a qualitative vertical profile encounters with series of problems with data mining, processing, and displaying, some of which are described and addressed within current article. The extraction of water levels and vertical infiltration isoline contours is considered to be more difficult in the creation of a vertical profile. The solution to the problem is reduced to the appropriate initial data acquisition and selective interpolation described in this article. In general, the article describes individual solutions, which have already been fully automated in the RTU Environmental Modeling Centre.