The creation of appropriate adaptive control loop for interconnection of the different levels of municipality’ distributed service supply systems, including the legacy systems, is a new challenge for designers of automated control tools due to incompatibility of systems that apply a number of appropriate technical solutions and protocols that assures collaboration between automation devices such as sensors, actuators, and controllers. This paper enhances the Arrowhead Framework with support of such workflows, which promote systems within a System-of-System (SoS) to work towards its predefined goal, taking into account the dynamically changing environment, system capabilities, and use case needs. This paper offers to enhance one of the Arrowhead core systems, namely Event Handler System (EHS), which provides among others orchestration services. We describe its main services and operations, implemented by data-driven implementation way, based on dynamic workflow execution, and by employing Node-RED programming tool. Furthermore, we demonstrated implementation of EHS workflow Internet of Things (IoT) architecture for small and distributed automation systems, namely, for municipality’ systems and adaptive biological systems, like beekeeping processes automation